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Image Search Results
Journal: Biomolecules
Article Title: Proteomic and Bioinformatic Investigations of Heat-Treated Anisakis simplex Third-Stage Larvae
doi: 10.3390/biom10071066
Figure Lengend Snippet: The native tertiary structures of identified allergens. Prediction of unknown 3D structures of allergens: Ani s 1 (77% of residues modeled at > 90% confidence, model dimensions in angstroms (Å): X:64.335 Y:49.060 Z:49.310) ( a ), Ani s 2 (99% of residues modeled at > 90% confidence, model dimensions in Å: X:160.179 Y:213.187 Z:160.224) ( b ), Ani s 3 (99% of residues modeled at > 90% confidence, model dimensions in Å: X:368.887 Y:109.731 Z:146.232) ( c ), and Ani s 4 (86% of residues modeled at > 90% confidence, model dimensions in Å: X:31.951 Y:46.659 Z:32.835) ( d ) were performed using the Phyre2 server. The allergen Ani 5 structure was visualized based on the structure from the Protein Data Bank PDB ID: 2MAR ( e ). PyMOL software was used to visualize all structures. Colors of the allergen models are according to secondary structure: helices highlighted in red, sheets in yellow, and loops in green.
Article Snippet: Probable epitopes were found in 61% of autoclaved allergenic peptides ( ) using algorithms of DNASTAR
Techniques: Software
Journal: Biomolecules
Article Title: Proteomic and Bioinformatic Investigations of Heat-Treated Anisakis simplex Third-Stage Larvae
doi: 10.3390/biom10071066
Figure Lengend Snippet: The native tertiary structures of homologous allergens, as identified using AllergenOnline.org for potential allergens of A. simplex . Prediction of unknown 3D structures of allergens: Ani s 8 (85% of residues modeled at > 90% confidence, model dimensions in angstroms (Å): X: 62.875 Y: 60.531 Z: 35.486) ( a ), Ani s 9 (87% of residues modeled at > 90% confidence, model dimensions in Å: X:54.278 Y: 58.349 Z:28.680) ( b ), Ani s troponin C (99% of residues modeled at > 90% confidence, model dimensions in Å: X:50.390 Y: 40.831 Z:35.415) ( c ), Asc l 3 (99% of residues modeled at > 90% confidence, model dimensions in Å: X:361.607 Y:132.976 Z:152.396) ( d ), Tyr p 28 (97% of residues modeled at > 90% confidence, model dimensions in Å: X:81.072 Y:91.096 Z:63.286) ( e ), Der f 33 (89% of residues modeled at > 90% confidence, model dimensions in Å: X:63.736 Y:59.230 Z:58.888) ( f ), Der f 33-like (90% of residues modeled at > 90% confidence, model dimensions in Å: X:57.763 Y:55.796 Z:56.582) ( g ), Aed a 8 (90% of residues modeled at > 90% confidence, model dimensions in Å: X:57.763 Y:55.796 Z:56.582) ( h ), Ole e 15 (100% of residues modeled at > 90% confidence, model dimensions in Å: X:38.017 Y:36.365 Z:47.475) ( i ) were performed using the Phyre2 server. Allergen 3D structures of Ani s 2 and Ani s 5, which are also homologs of potential allergens, are shown in . PyMOL software was used to visualize all structures. Colors of the allergen models are according to secondary structure: helices highlighted in red, sheets in yellow, and loops in green.
Article Snippet: Probable epitopes were found in 61% of autoclaved allergenic peptides ( ) using algorithms of DNASTAR
Techniques: Software